ADD COMMENT link 3.0 years ago Michael Love 37k. maptools Set of tools for manipulating and reading geographic data, in particular ESRI . Hello, I am running ubuntu 12.04 since it came out and have not had an issue that was not easily resolved. Obtain 'jQuery' as an HTML Dependency Object R-jsonlite-1.8.0 Robust, high performance JSON parser and generator for R R-knitr-1.38 General-purpose package for dynamic report generation in R R-labeling-0.3 Axis labeling R-later-1.3.0 Utilities for delaying function execution R-latex2exp-0.5.0 Use LaTeX expressions in plots R-latticeExtra-0.6.29 You can fix this by opening the file"LogitWithR.r", located in the Scripts directory, in a text editor. Then run: sudo dpkg --configure -a. Perhaps you should add the directory containing `libv8.pc' to the PKG_CONFIG_PATH environment variable No package 'libv8' found Using PKG_CFLAGS= Using PKG_LIBS=-lv8 ------------------------- ANTICONF ERROR --------------------------- Configuration failed because libv8 was not found. The Power BI service supports packages published in CRAN. R . dstrong February 18, 2021, 6:31pm #2 Once you have a package installed, you can make its contents available to use in your current R session by running. the foreign, maptools, FAwR, boot, survey, gmodels, Hmisc, norm, RODBC, RPostgreSQL, RMySQL, and rconifers packages are used. But now, when I try to update or install new packages it pops up an eror message telling me that the package catalog needs repaired, I click repair and than it tells me it was unable to repair. Unfortunately, if some of the numbers used in the inverse calculation are very small, it assumes that they are zero, leading to the assumption that it is a singular matrix. 3. WARNING ``` LaTeX errors when creating PDF version. It solves my problem .Sometimes quick fixes are better way to deliver your product on time Solution 1 As the message states, you are trying to insert duplicate values in @TCategory table which is not allowed. Thanks! Leptospermum scoparium is emerging as an economically important plant for the commercial production of mnuka honey and essential oils, both exhibiting unique antibacterial attributes. This class of errors typically tells you the name of the package you need. maps Draw geographical maps. ls.str () ls.str (mode = "list") ls.str (patten = "^\\w$", mode = "list") list. > Loading required package: foreign > Loading required package: sp > Loading required package: lattice > Checking . This development version is more recent than the official release of spatstat on CRAN. repoBinPath: Construct path to full binary location; repoPrefix: Get the path to the repo directory containing the package. Anaconda Tool -- Global Options -- General -- R version4.0.3R RstudioRR RHmiscforeign : R cfdchen - 0 - 1 + 0 0 (FFT)--Matlab vs Tecplot 3D Navigate to your ms4w folder in the command prompt window and run apache-install.bat. I get the following message: package 'foreign' is not available (for R version 3.6.3) from the following line of code: Rswarm is a utility to create a series of R input files from a single R (master) template file with different output filenames and with unique random number generator seeds. RE: BIOMOD_FormatingData By: Nobody on 2013-11-18 12:56 [forum:40071] Dear Antelmo, The bug you reported seems to be more due tu GBM package than to biomod2 one.. Making test you suggested, I saw that GBM always fail when you work with a single explanatory variable and you try to do some cross validation to determine optimal parameters. ERROR: dependency 'AnnotationDbi' is not available for package 'org.Hs.eg.db' AnnotationDbi org.Hs.eg.db , . The authors stress the importance of debugging R In this talk, we will outline the somewhat unique aspects of the package and how it impacts the development environment (including . > Loading required package: foreign > Loading required package: sp > Loading required package: lattice > Checking . The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption (https, ftps), gzip compression, authentication, and other 'libcurl' goodies. > Error: gpclib, maptools package . The function mahalanobis internally uses solve which is a numerical way to calculate the inverse. Click File > New File > R Script. The paper begins with an overview of recent progress with respect to the You can switch to a different CRAN mirror from the RStudio Options Menu. Any help would be really appreciated! The "Install from" selection list contains only "Repository (CRAN)" "Install to Library" is set to "'/home/alligator/R/x86_64-suse-linux-gnu-library/3.6/Default'" Note that you must have a spatialdataframe as designated by the sp package (autoloaded with rgdal), I suspect your results of rasterToContour are the correct format. #R code assumes library (rgdal) writeOGR (x, "PG:dbname='BDDMeteo' user . SpatialPoints, and extensions . DESeq2 depends on Hmisc, so that is the main problem here. GNU R package of classes for dense and sparse matrices dep: r-cran-nlme GNU R package for (non-)linear mixed effects models dep: r-cran-sp (>= 1.0) GNU R classes and methods for spatial data sug: r-cran-foreign GNU R package to read/write data from other stat. Task #3: Generate summary statistics. Fitting Linear Models with Endogenous Regressors when No External Instruments are Available : 2015-12-09 : riskR: Risk Management . Rswarm was originally developed by Lori Dodd and Trevor Reeve with modifications by the Biowulf staff. Following the code I presented above, the biomod2 returns multiple binary maps, because it apparently does not understand the names, which should be expected by "RF" augment of 'grep' function. Other packages using biocmanager failed to install when 'BiocNeighbors' is a dependency. . Please verify that GDAL actually works, since gdal-config is a shell script. If you manually installed a package that had unmet dependencies, apt-get will install those dependencies, if possible, otherwise it may simply remove the package that you installed in order to resolve the problem. I tried to install 'BiocNeighbors' by itself but I get the same error (compilation failed). Now click on "Collect inventory data" and it will open a window which will allow you to choose options about what and how to discover. Because each base environment tells you which Linux variant is running (in this example, Ubuntu:18,04), you now know that you need libv8-dev or libnode-dev. Example: Now we can start writing our do-file (okay, from now onwards I'll say R Script). R users are doing some of the most innovative and important work in science, education, and industry. shape les (See later topic) . GeoMoose, Mapbender, OpenLayers, etc.). RTools: Toolchains for building R and R packages from source on Windows. I try to install via RStudio -> "Install packages" by selecting the specific package from the list. > Error: gpclib, maptools package . . Therefore by default the @proj4string slot is set to NA =\not available". "Non-zero exit status" just means "something went wrong" (this is a longstanding UNIX convention ). Access to the package page can be done using shortcut Ctrl+7. Since this condition is false then it is trying to add the depreciated library "Design". Hi, I am using Ubuntu 18.04, R 3.4.4 (2018-03-15), and Rstudio 1.2.1335. United States. The rgeos package does have an external dependency, but is available as a CRAN binary for Windows and OSX, so there is no reason at all for ggplot2 to suggest gpclib rather than rgeos. The Mahalanobis distance requires you to calculate the inverse of the covariance matrix. I presume that if you were to update vegan to be built with your current R, this problem will go away. AER . So, I get: I do not have any useful experience with any OSX systems (there are so many and they change so fast), so this is guesswork. Note that the mpi dependency is a different kind of beast than the adept-utils and callpath dependencies; there is no mpi package available in Spack. I am fairly new to R and having some issues installing the foreign package. [25] classInt_0.4-1 jsonlite_1.6 foreign_0.8-70 This means that geojsonio relies on functions from 27 separate packages, each of which needs to be installed, and each of which may depend on other R packages, and system-level dependencies, and so on. Command line parameters in R. It is possible to call an R program on the command line with arguments for the R program. RR install.packages()CRAN1install.packages("ggplot2") 12345678910install.packages(pkgs, lib, repos = getOption(" . Everything was working fine but since I upgraded from R version 3.0 (2013-09-25) -- "Frisbee Sailing" to R 3.0.2 "Spring Dance" (because suddenly the extract function 2 install.packages () if(!require( ggplot2 )) install.packages('dplyr', dependencies = TRUE) ggplot2 apckage 3 RTools install.packages("ggplot2", type ="source", dependencies = TRUE) . { maptools: interface to external spatial data structures e.g. A Dependency Management System for Projects and their R Package Dependencies : 2022-05-26 : pbo: Probability of Backtest Overfitting : 2022-05-26 : plotROC: Generate Useful ROC Curve Charts for Print and Interactive Use : 2022-05-26 : ProjectionBasedClustering: Projection Based Clustering : 2022-05-26 : QuClu: Quantile-Based Clustering . It will automatically arrange the data as per the requirements. spack.test.hg_fetch.test_fetch(type_of_test, mock_hg_repository, config, refresh_builtin_mock) . Hi Roger I am really battling to get maptools package to work on on my system (OS X 10.9.3 Mavericks - see session at bottom of message). To install an R package, open an R session and type at the command line. Therefore by default the @proj4string slot is set to NA =\not available". PATH RTools Welcome to MS4W, the quick and easy installer developed by GatewayGeo for setting up MapServer For Windows and its accompanying applications (e.g. the packages that you will have to install in order to thoroughly check your own package The Power BI service, for the most part, supports R packages with free and open-source software licenses such as GPL-2, GPL-3, MIT+, and so on. To convert the three sets of events (i.e., the fast food establishments, gas stands, and Paez Mart) into ppp objects we first must define a region or window.To do this we take the sf and convert to an owin (a window object) for use with the package spatstat (this is . Supplement to package maps, providing the larger and/or higher-resolution databases. 2011 1 . Then, since we cannot see the output from R when calling the script remotely in ArcGIS, the code prints the results in a .dbf file. R CHIPseeker . Start: 2021-09-09 14:55:00 GMT [stable] Package: r-cran-broom.mixed Version: 0.2.6-2 Installed-Size: 4475 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-cran-broom, r-cran-dplyr, r-cran-tidyr, r-cran-plyr, r-cran-purrr, r-cran-tibble, r-cran-reshape2, r-cran-nlme, r-cran-stringr, r-cran-coda, r-cran-tmb, r-cran-cubelyr Recommends: r . Spack may satisfy that dependency by installing packages such as openmpi or mpich. CSDNRmaptools!Rmaptools! r CSDN The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities: curvHDR: Filtering of Flow Cytometry Samples: cusp: Cusp-Catastrophe Model Fitting Using Maximum Likelihood The function writeSpatialShape() resides in the maptools package and does exactly what it sounds like, depositing the new shapefile in the working directory. This typically indicates Rd problems. R . (No MacOS X binaries are available). This is normally a warning, but devtools upgrades warnings to errors (it seems; or something did), and it is that warning-upgraded-or-error that is causing this to fail. If you aren't sure why you have included BiocInstaller (namely, if you are not using a package that is available at Bioconductor), try removing it. If the analysis does not depend on knowing the CRS, it can be left as-is. install.packages("<the package's name>") R will download the package from CRAN, so you'll need to be connected to the internet. Also, what is the output of rsconnect :: appDependencies () Check if the test_file is in the checked out repository. (No MacOS X binaries are available). From this dialog you can search packages in CRAN and install those that you found. The errors at the end are happening as a result of the earlier errors packages are failing to load because other packages they depend on failed to install. Now, you will have the mentioned below screen in the database section. I ran sudo apt-get install gdal-bin proj-bin libgdal-dev libproj-dev and got the following output: Reading package lists. ERROR_HOST_DOWN. . In taking a quick look at the R code ESRI has built in a very specific (2.14) version dependency. You can include Bioconductor, R-Forge, and others by using the setRepositories () command from the console. Managing Packages If keeping up with the growing number of packages you use is challenging . There are a handful of requirements and limitations for R packages: Current R runtime: Microsoft R 3.4.4. CRAN Package Check Results for Maintainer 'Scott Fortmann-Roe <scottfr at berkeley.edu>' Last updated on 2015-12-22 00:47:33. During installation, you will get a message like: ERROR: dependencies 'yyyyyy' are not available for package 'xxxxxx' In this case, install package 'yyyyyy' first. Otherwise, assign after conversion, with . The caret package is a unified interface to a large number of predictive model functions in R. First created in 2005, the home for the source code and documentation has changed several times. 1.caret. Set your default repositories By default, R will only search for packages located on CRAN. RTools 4.0. for R from version 4.0.0 to 4.1.3. old versions of RTools. cardependencies = TRUE FALSE. RTools 4.2. for R >= 4.2.0. R offers a variety of tools and packages for quantitative data analysis. If the analysis does not depend on knowing the CRS, it can be left as-is. Tries to: Fetch the repo using a fetch strategy constructed with supplied args (they depend on type_of_test). What happens when you try to install DESeq2: BiocManager::install ("DESeq2") If you do not have permissions, you may have to ask an administrator to reinstall for you. . systems sug: r-cran-igraph I tried to obtain binary maps by the 'BinaryTransformation . this is where I have gotten so far. The rgeos package does have an external dependency, but is available as a CRAN binary for Windows and OSX, so there is no reason at all for ggplot2 to suggest gpclib rather than rgeos. Otherwise, assign . 6.The gstat package: geostatistical modelling, prediction and simulation D G Rossiter. Please verify that GDAL actually works, since gdal-config is a shell script. ``` # BacArena Version: 1.7 ## In both * checking package dependencies . Process failed because dependency 'BiocNeighbors' compilation failed. Take a look at all the insert statements for this table in your code. { maptools: interface to external spatial data structures e.g. RE: BIOMOD_FormatingData By: Nobody on 2013-11-18 12:56 [forum:40071] Dear Antelmo, The bug you reported seems to be more due tu GBM package than to biomod2 one.. Making test you suggested, I saw that GBM always fail when you work with a single explanatory variable and you try to do some cross validation to determine optimal parameters. plot.pkgDepGraph: Plots a package dependency graph. and you'll notice that an "Untitled1" file covers the auto dataset. NOTE: Sometimes a package depends on another package. There are several references to the far package but this is a typo since the functions referenced are actually in the FAwR package. Quantitative data are those datasets that support the arithmetic operations. Instead mpi is a virtual dependency. Technology. Build Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Link Dependencies: elpa, cereal, libxc, fftw, mpi, mkl Run Dependencies: mpi Description: ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles The purpose of this package is to allow novice to advanced MapServer users to quickly install a MapServer development environment on their Windows systems. pkgDep: Retrieves package dependencies. Projection code and larger maps are in separate packages. See the Packaging Guide for more information on virtual dependencies. As discussed in the preceding chapter, the package spatstat offers a very rich collection of tools to do point pattern analysis. The function write.dbf() is in the package foreign. You should use rgdal, specifically writeOGR (which is for vector data) to write the table to Postgis. Inspired by R and its community The RStudio team contributes code to many R packages and projects.
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